SE3530085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6303
  • Mimulus guttatus
  • SE3530085
  • hAT
  • Hat8
  • scaffold_14:18405823-18406493
  • TCAACAAC
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
            TCA     CAAGGTTGTAAAAAGCGGTAATCGGGTCCGAGTCGGTCAGGCACCGACTCACGATTAATCGGTGCGGCGGTGATTAATCGGTGATAAATCGGAAATAAATCGGTTTTTAAAATTTAATATAATATATTTTTAAATATTATTTATAAATACTCCAAACATATATAAAAAGATATTTAAACATAGTTATATCTCCATCATGTATATATCCTAATAACATAATAAAAGTTTAATAATTATAAGATCACAATACATAAATATCCTTATAAAATATTAATAAAAAAATAATTTTTTTGAATTTACATTTATTCTTGAACATTCCTG
               ACAAC                                                                                                                                                                                                                                                                                                                                 
               |||||                                                                                                                                                                                                                                                                                                                                 G
               GATTT                                                                                                                                                                                                                                                                                                                                 
CAACAACTGTCACAA     TTAGCCAGCTCCGCCGGCTAATTAGCCAGAGGCTCCGCCTCCGCCAAGTTTTGGAAATGCTAAAATCACATTTCCAAACTTTTTAGCCAAAAAACGGACACTCCGCCAAAATCCGCCAGACTCCGCCAGGCTCCGCCAGTTTGGAAATTCCGCCCAGTTTGAGCCACCGTTTTTAGCCAGTTTTTAGCCAATTTTTAGCCAAAAAAAAAAAAAAAAAAAAATATTAAGTTTTATTTTCAACCTAAAATTATTTTCTTTTATACTCAAATACGGAATAAAACAAATACAATTAACAATAACAATTTCTTGATTACTACATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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