SE3520086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6304
  • Mimulus guttatus
  • SE3520086
  • Mutator
  • M8
  • scaffold_4:2114786-2115229
  • TTATTTTTA
  • AGGGTAAATTACAAACACCCCCCTGAGGTATGGTTAAATTACAAAAACACCCCTCTTGTTTGGTTAATTACAACCACCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTT                                                               T        A C      -   ACTCATCAAATTTAGTGGAATCTTCGAGATTATATGGAATATTATCACTTTTGTACCCGTTTTATCTCATTCAAACTCTACATTATGAAGCAAGATGATCATAATATGTGATTTTTAGCTTGTATATAT
        AGGGTAAATTACAAACACCCCCCTGAGGTATGGTTAAATTACAAAAACACCCCTCTTGTTTGG TAATTACA C ACCCCC TCA                                                                                                                                 
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||                                                                                                                                 C
        TCCCATTTAATGTTTGTGGGGGGACTCCATACCAGTTTAATGTTTTTGTGGGGAGAACAAACC ATTAATGT G TGGGGG AGT                                                                                                                                 
ATTTTTAT                                                               T        A A      G   TTATACTAAAAAAGAATCTGGAGGTGGAAATACCACGGTTTAAGTTGTATCAGTAGATCTAAGACACTTTACACGAGATCAAACATGAGAAAAACACATTTTTTATGTCAAAGGCTACGTGGTGTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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