SE3520087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6305
  • Mimulus guttatus
  • SE3520087
  • Mutator
  • M3
  • scaffold_4:9675335-9675735
  • TTTTCGTAA
  • CGTAAGGGTAAATTACACCCACACCCATGAGGTATGCTTAAATAATTTTAAGGTCCCTGTGCTATCGATAATTACACTTACCCCGGAAACATAATTAGAAACTCTAATGGGATAATGTATTGGATACGTTATTCCGTTAGAGTTCTAACGGACTATTACTTTTAGCTAGTGGTGGAGACAACATGGAGTTAGG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTT  -T              C        A                            C     C                      -G        A      AC                        C         T           C         C      CT                T       G GGG
    CG  AAGGGTAAATTACA CCACACCC TGAGGTATGCTTAAATAATTTTAAGGTC CTGTG TATCGATAATTACACTTACCCC  GAAACATA TTAGAA  TCTAATGGGATAATGTATTGGATA GTTATTCCG TAGAGTTCTAA GGACTATTA TTTTAG  AGTGGTGGAGACAACA GGAGTTA G   
    ||  |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  |||||||| ||||||  |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||  |||||||||||||||| ||||||| |    
    GC  TTCCCATTTAATGT GGTGTGGG GCTCCATACGAATTTATTGAAATTCCAG GACAC ATAGCTATTAATGTGAGTGGGG  TTTTGTAT AATCTT  AGATTACTCTATTACGTAACCTAT CAATAAGGC ATCTTAAGATT CCTGATAAT AAAGTC  TCACTACCTCTGTTGT TCTCGGT C   
 AAT  TT              A        G                            T     C                      GA        C      CT                        A         T           A         C      CT                T       A AGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End