Plant MITE

SE3520088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6306
Mimulus guttatus
SE3520088
Mutator
M3
scaffold_4:1714952-1715290
TATTTTTTA
TAAATTACACTTACATCC

Secondary structure and sequence

TSD TIR

5'

3'

TATTTTTTATGA                  CTAAA          ACAACT         G   A    C          A  T T   --        ATAAA  TACGGCCTAACATTTCTTAAATCCTTATTATTTTATATAAAAATTATAAATTTTCGTCTATGGTAGC
            TAAATTACACTTACATCC     GTATGTTAAA      TTAAGGTCC TGT GTAT GGTAGTTACA TC C CCT  GAAACAAT     GC                                                                   
            ||||||||||||||||||     ||||||||||      ||||||||| ||| |||| |||||||||| || | |||  ||||||||     ||                                                                    
            ATTTAATGTGGATGTGGG     CATACGATTT      AATTTCAGG ACA CATA CTATTAATGT AG G GGA  TTTTGTTA     AT                                                                   
TATTTTTTTCCC                  AACTC          AATCGC         G   C    A          C  T T   AA        -----  GGCCTCAGTTATAAAGTACAGGACTGCTGGCTATACGTGATATAAACAGAGGGCGTCCCGGCAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520088

TATTTTTTATGATAAATTACACTTACATCCCTAAAGTATGTTAAAACAACTTTAAGGTCCGTGTAGTATCGGTAGTTACAATCTCTCCTGAAACAATATAAAGCTACGGCCTAACATTTCTTAAATCCTTATTATTTTATATAAAAATTATAAATTTTCGTCTATGGTAGCATTAACGGCCCTGCGGGAGACAAATATAGTGCATATCGGTCGTCAGGACATGAAATATTGACTCCGGTAATTGTTTTAAAGGTGTGACTGTAATTATCAATACCACAGGGACTTTAACGCTAATTTAGCATACCTCAAGGGTGTAGGTGTAATTTACCCTTTTTTTAT

Copy Cancel