SE3550089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6307
  • Mimulus guttatus
  • SE3550089
  • PIF/harbinger
  • To10
  • scaffold_3:2045843-2046078
  • TAA
  • AGGGTGCATTTGGATGGAGGGATTTGGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     G                        ----A       C        AATAA    -        A  TGTTTGGATTGAGGGATTTGGAGATGGATTTCAAATCCCCACCCCTCAT
  AGGGT CATTTGGATGGAGGGATTTGGGGG     GGGATTT AAATCCAT     CAAA TCCCTCGG CT                                                 
  ||||| ||||||||||||||||||||||||     ||||||| ||||||||     |||| |||||||| ||                                                 T
  TCCCA GTAAACCTACCTCCCTAAACCCCT     AACTAAA CCCTTACC     TAAA TTTACTGA GG                                                 
AA     G                        CCCTA       C        -----    C        -  TTAAAACCTCAGTAAACTTTAGGTAGTGATAACGAGGTTTTAGTTGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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