SE3520093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6311
  • Mimulus guttatus
  • SE3520093
  • Mutator
  • M3
  • scaffold_6:4315646-4316088
  • TAAAATTAA
  • AGGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAACTTTAAGGTTCCTGTGGTATCGATAATTACACTCACCCCCTTGAAACGTAGTTATAAACTCTCATGGGATAATGCATTGGATACGTTATTACGATAGAGTTCTAACGGACTATTGGTTTCAGGAAGTGGTGGAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAATTA                         A               C                                  C C   T            T       C                          TA              C         G   C  GA           CAACAA           T  A   AGAAATAT     -  GCC
        AGGGTAAATTACACCCACACCCCTG GGTATGCTTAAATAA TTTAAGGTTCCTGTGGTATCGATAATTACACTCA C CCT GAAACGTAGTTA AAACTCT ATGGGATAATGCATTGGATACGTTAT  CGATAGAGTTCTAA GGACTATTG TTT AG  AGTGGTGGAGA      AGAGTTATGGG GA TTA        TGGGG GA   
        ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||| ||  |||||||||||      ||||||||||| || |||        ||||| ||    
        TCCCATTTAATGTGGGTGTGGGGAC CCATACGAATTTATT AAATTCCAGGGATACCATAGCTATTAATGTGAGT G GGA CTTTGCATCAAT TTTGAGA TGCCCTATTACGTAACCTATGTAATA  GCTATCTCAAGATT CCTGATAAT AAA TC  TCACCACCTCT      TCTCAATACCC CT AAT        ACCCC CT   
AATTAAAA                         A               A                                  A C   -            C       T                          AG              A         G   A  GA           ATTCTA           -  C   --------     A  GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End