SE3520095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6313
  • Mimulus guttatus
  • SE3520095
  • Mutator
  • M5
  • scaffold_5:17491814-17492205
  • TTTAATTAA
  • TTAATTAAGGGTAAATTACAAAACCCGCCTGAACTTAGTCTAAATAACGAAAAGCACCCCCCACATATTTGTAATTACCAAAAACCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -           -       G     --      T               -       C  A          T       A      -------------    TTTGTTTCCGTCTCTAACACCAAACCATGTTTCCATCTTACACCAACCCCCTTACAGCGTGATTTTTCACGGATTTTTTTTTTGTTCTAGGAA
 TTAATTAA GGGTAAATTAC AAAACCC CCTGA  ACTTAG CTAAATAACGAAAAG CACCCCC AC TATTTGTAAT ACCAAAA CCCCCT             GATG                                                                                             
 |||||||| ||||||||||| ||||||| |||||  |||||| ||||||||||||||| ||||||| || |||||||||| ||||||| ||||||             ||||                                                                                              
 AATTAATT CCCATTTAATG TTTTGGG GGACT  TGAATC GATTTATTGCTTTTT GTGGGGG TG ATAGGCATTA TGGTTTT GGGGGA             CTAG                                                                                             
         T           C       G     TT      C               T       -  G          T       A      GACCAATTGACAA    CTCAAAACATTATCTTTTACACGTGTTAGATAATATGGAAGACAATTTATCCACTCTTTATTTTCTTTTATAGACTTTAACACATTTCAGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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