Plant MITE

SE3520096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6314
Mimulus guttatus
SE3520096
Mutator
M5
scaffold_1:5422747-5423105
TTAAAAATA
AGGGTAAATTACAAAAACCCGATGAACTTAGGCTAAATAACGAATAACACCCCCACATATCCGTAATAACCAAAATCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAAT           CA       GA              A       T      CC   A   C      A       T    --    -   TAACTGTTGGTTGAGTTTTTTAACAGAAAATGTGTACAGTCTATTATACCTTATGTTAAATGGGTGAGAAATAAAAGAAAATAT
        AGGGTAAATTA  AAAACCC  TGAACTTAGGCTAA TAACGAA AACACC  CAC TAT CGTAAT ACCAAAA CCCC  TTCT GAA                                                                                    
        |||||||||||  |||||||  |||||||||||||| ||||||| ||||||  ||| ||| |||||| ||||||| ||||  |||| |||                                                                                    C
        TCCCATTTAAT  TTTTGGG  ACTTGAATCCGATT ATTGCTT TTGTGG  GTG ATA GCATTA TGGTTTT GGGG  CTCC AAC                                                                                    
ATAAAAAT           TC       -G              -       T      -A   G   A      A       T    TA    A   AAAGGCAGAATGTGGTTAGGGGAATGTAACACTGAAAAATGCATCAAAAAAAAATAAGGTCACTTATCTGAAATGTGTTAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520096

TTAAAAATAGGGTAAATTACAAAAACCCGATGAACTTAGGCTAAATAACGAATAACACCCCCACATATCCGTAATAACCAAAATCCCCTTCTGAATAACTGTTGGTTGAGTTTTTTAACAGAAAATGTGTACAGTCTATTATACCTTATGTTAAATGGGTGAGAAATAAAAGAAAATATCTGAAATTGTGTAAAGTCTATTCACTGGAATAAAAAAAAACTACGTAAAAAGTCACAATGTAAGGGGATTGGTGTAAGACGGAAACAAACCTCATGGGGTTTTTGGTAATTACGAATAGGTGAGGTGTTTTTCGTTATTAGCCTAAGTTCAGGGGTTTTCTTAATTTACCCTTAAAAATA

Copy Cancel