SE3520097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6315
  • Mimulus guttatus
  • SE3520097
  • Mutator
  • M3
  • scaffold_7:3580836-3581276
  • TAATTATAT
  • TAATTATATGGGTAAATTACACCTATCCCCTGAGGTATGCTAAAATAACTTTCGGGTCCCTGTAGTATTGGTAATTACAGTCAACCCCCTGAAACATTGTTGGA

Secondary structure and sequence

TSD    TIR
5'



3'
         TAT              -TAT      A      C            C    C C   A                   AC   C    AC         AACCCTA  G  AA  GCATTGGATAAGTTATTCAGTTGGGGTTCTAACGGACTATTAGTTCCAGGCAGTGGTGGGGACAACATAAAGCTAGGGGGTGACATGGCTCTCCTAACATTTCT
   TAATTA   GGGTAAATTACACC    CCCCTG GGTATG TAAAATAACTTT GGGT C TGT GTATTGGTAATTACAGTCA  CCC TGAA  ATTGTTGGA       AC GA  AT                                                                                                        
   ||||||   ||||||||||||||    |||||| |||||| |||||||||||| |||| | ||| |||||||||||||||||||  ||| ||||  |||||||||       || ||  ||                                                                                                        T
   ATTAAT   CCCATTTAATGTGG    GGGGAC CCATAC ATTTTATTGAAA TCCA G ACA CGTAACCATTAATGTCGGT  GGG ACTT  TAATGACCT       GG TT  CT                                                                                                        
TAT      ---              TTGT      C      A            T    A A   C                   GT   A    AT         ------C  -  --  AAAGTACAGAACCCCTGGCTATACGTGATATAAGCAAAGGGTACCCCGGCCATTAACATGCTATCTGCTTTTAGATATTTAGAATATATTTTATTACTCCTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End