SE3550098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6316
  • Mimulus guttatus
  • SE3550098
  • PIF/harbinger
  • To11
  • scaffold_8:16494388-16494746
  • TTA
  • AGAGCAACTCCAGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                AGGAATTAAA     A          - TAACTTCTATTTTGATGCTCCAAAACATAAATTTTCATCTCCAATGGGGGAATTAAATTGGTAGTTATTTTGATATTCAACTTCCCGAGATGCAAAAATGCATCCTGGAAAAAGAGGTATCAAAACATTAACTACCCA
  AGAGCAACTCCAGTGG          TGGGG ATTAAATGGA A                                                                                                                                          
  ||||||||||||||||          ||||| |||||||||| |                                                                                                                                          A
  TCTCGTTGAGGTTACC          TTCAT AGTTTTAGCT G                                                                                                                                          
AT                --------AT     -          A TAGTTTATAATTAAACTATGAGCAAAATAATAAAACTATGAGTAAATGAGGTTGGCGTTCGTAATTTACTTAGTAGATTAAAATTTATATTCGTATTTATATAAATTATAACTGTGCACAGTTAAAAATTAACCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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