SE3520099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6317
  • Mimulus guttatus
  • SE3520099
  • Mutator
  • M18
  • scaffold_7:8606787-8607193
  • TAATAATAA
  • AGGACAAAATGCACTTCACCCCCTATAAGTTTTCTATTTTCACACTTGCCCCCCTAAAAATTCAATAAAGGGATACGCCCCCTTCGAAATATTATTTTGGTTGCATTTTGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAATA   AC   A     T         A        CT     CAC    -      CTA      CAA      GA  CG             A       G       T       AGAA     TTTTTGGAGGGCATTGTGCGACAAAAATCACATTTTAGAGGGGCAACGTGCAAAAAATTTAGTGTTTTTAAGC
        AGG  AAA TGCAC TCACCCCCT TAAGTTTT  ATTTT   ACTT GCCCCC   AAAATT   TAAAGG  TA  CCCCCTTCGAAAT TTATTTT GTTGCAT TTGCCCC    TCCAA                                                                         
        |||  ||| ||||| ||||||||| ||||||||  |||||   |||| ||||||   ||||||   ||||||  ||  ||||||||||||| ||||||| ||||||| |||||||    |||||                                                                         G
        TCC  TTT ACGTG AGTGGGGGA ATTTAAAG  TAAAA   TGAA TGGGGG   TTTTAA   ATTTTC  AT  GGGGGAAGTTTTA AATAAGA CAACGTG AACGGGG    TCGTT                                                                         
AATAATAA   CA   A     T         C        AT     ACA    A      -CG      -AA      AC  AA             C       A       T       -CAA     TTGAGGCTACCTAATAAGTAGCTTTAGCTCATAAAGGCAACGGGCAAATTTACAATAAAAATAATGTGTGACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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