Plant MITE

SE3530101

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6319
Mimulus guttatus
SE3530101
hAT
Hat9
scaffold_9:11357093-11357631
AGTAGGGC
GTAGGGCCAGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

A  AGG  -       GTT     --     --  ----     CCTAGGCGAGATTTGAAGACGGATAAAAATGGGGCCCCTTCTACAATCTGCAATAAAACTTTTTTTTTATAAAAGGTGATAAACTCTATTTTAACTCGATTTTGTAAGGTACATAGCCAGTGGCACGATTAAAAATTTGTGATATAGTAGGATTAAAGTTTACGGGGGTTCGGGGGCAGCGCCCCCGATTTTTTTAAGGATAATTTGCATGAAGTAGCACTAAAACAAGTAA
 GT   GC CAGGGCC   CCTGA  GATTT  TG    GGGGC                                                                                                                                                                                                                                        
 ||   || |||||||   |||||  |||||  ||    |||||                                                                                                                                                                                                                                         
 CG   TG GTCCCGG   CCAAG  TCCCC  CG    ATCCG                                                                                                                                                                                                                                        
   GGA  A       ---     AC     TC  CTTC     CCAGCGGATCCCGGGGGCCTAAAAAAGTTTTTAAATCCCGGGGCTTAAAAAAATATGGGAAATATATACTTGTAAATAACTTTTTTTTATATAATATATATATTAATAACTCTTAAAATTAAGTATTTATCGATAATAGTTGCTAAAAATGAACAAAAATCTTAAGGAGATTAGTACTCTCTGGTGATTAATAATTTAAACATTACATAATCAATAAATGAAAATATATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530101

AGTAGGGCCAGGGCCGTTCCTGAGATTTTGGGGGCCCTAGGCGAGATTTGAAGACGGATAAAAATGGGGCCCCTTCTACAATCTGCAATAAAACTTTTTTTTTATAAAAGGTGATAAACTCTATTTTAACTCGATTTTGTAAGGTACATAGCCAGTGGCACGATTAAAAATTTGTGATATAGTAGGATTAAAGTTTACGGGGGTTCGGGGGCAGCGCCCCCGATTTTTTTAAGGATAATTTGCATGAAGTAGCACTAAAACAAGTAAATATATATAAAAGTAAATAACTAATACATTACAAATTTAATAATTAGTGGTCTCTCATGATTAGAGGAATTCTAAAAACAAGTAAAAATCGTTGATAATAGCTATTTATGAATTAAAATTCTCAATAATTATATATATAATATATTTTTTTTCAATAAATGTTCATATATAAAGGGTATAAAAAAATTCGGGGCCCTAAATTTTTGAAAAAATCCGGGGGCCCTAGGCGACCGCCTACTTCGCCTCCCCTCAGAACCGGCCCTGAGTAGGGC

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