SE3520102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6320
  • Mimulus guttatus
  • SE3520102
  • Mutator
  • M3
  • scaffold_7:3580836-3581276
  • ATATAATTA
  • TAATTAGGGTAAATTACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA      ---              AACA                          AA           C              C  CA       ------   --      -  AG -   GATTTCATGTCTTGGGGACCGATATGCACTATATTCGTTTCCCATGGGGCCGGTAATTGTACGATAGACGAAAATCTATAAATCTTATATAAAATAATGAGGATTTA
   TAATTA   GGGTAAATTACACC    CCCCTGGGGTATGTTAAAATAACTTT  GGTTCTTGTGG ATTGGTAATTACAG CA  CCCTTGA      ATA  ATTACT GG  C CAA                                                                                                           
   ||||||   ||||||||||||||    ||||||||||||||||||||||||||  ||||||||||| |||||||||||||| ||  |||||||      |||  |||||| ||  | |||                                                                                                            
   ATTAAT   CCCATTTAATGTGG    GGGGACTCCATACGATTTTATTGAAA  CCAGGGACATC TAACCATTAATGTC GT  GGGGACT      CAA  TTTGGG TT  G CTT                                                                                                           
         ATA              -ATA                          GC           A              A  TG       TTGTAA   CC      A  -- C   TTACGTAACCTATTCAATAAGTCAACCCCAAGATTGCCTGATAATCAAGGTCCGTCACCACCCCTGTTGTATTTCGATCCCCCACTGTACCGAGAGGATTGTAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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