SE3520103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6321
  • Mimulus guttatus
  • SE3520103
  • Mutator
  • M2
  • scaffold_6:18575761-18576231
  • TAATGATTA
  • TAATGATTAGGGTAAATTACGGCTACCCATGAGGTAAGGTCAAATTACGAAAAAACCCTTCATGTTTGGGCAATTACAACCACCCTTCAACTATGAACTTTCTTACACGTCCACCCTTACGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
    G                    ---   A                            C            C             C           A    -C     C  C       ACG          CAACAA             CCTA             A     T  C          AAAAA  --  TTTCTGATGCACCACAATCTAAAATTTACGAGCCAAGAGA
TAAT ATTAGGGTAAATTACGGCTA   CCC TGAGGTAAGGTCAAATTACGAAAAAACC TTCATGTTTGGG AATTACAACCACC TTCAACTATGA CTTT  TTACA GT CACCCTT   GTGTCAAATT      AATCTTCTAGATT    GGAATGTTCTCTA TTTGT CT GTTTTGTGCA     TC  AG                                        
|||| ||||||||||||||||||||   ||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||  ||||| || |||||||   ||||||||||      |||||||||||||    ||||||||||||| ||||| || ||||||||||     ||  ||                                         
ATTA TAATCCCATTTAATGCCGGT   GGG ACTCCATTCCAGTTTAATGCTTTTTTGG AAGTACAAACCC TTAATGTTGGTGG GAGTTGATACT GAGA  AATGT CA GTGGGAA   CACAGTTTAA      TTAGAAGATCTAA    CCTTATAAGAGGT AAACA GG CAAAATGGGG     TA  AT                                        
    G                    AAA   -                            A            A             A           -    AA     A  A       CAA          ATCACC             AACA             A     T  A          -----  AG  AGATCGAGGTGTAAAACTTTGTTCTACTAGTATTCTACAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End