SE3520104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6322
  • Mimulus guttatus
  • SE3520104
  • Mutator
  • M15
  • scaffold_164:34473-34850
  • TAAAAAGTA
  • TAGGGTAAATAGCACTTAACCTCCTCTGGTTACAAACTTTTGCAAATGATCCTCTTGTCCTCGTAATATCAGCACATAGCACCCTTGTGGTTTGTGGGGTAGCTTTCGGTTAGTTTTTCCGTCAACTTTAACCGCGTGTGTCAAACTTCTAAGGGCTCATCTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAG           G   T     T   C         A        A             C  CG        G        A           T     G           T        C     C         GT         T  T   -----------------GG     C   AAAAATGAAAG
       TAGGGTAAATA CAC TAACC CCT TGGTTACAA CTTTTGCA ATGATCCTCTTGT CT  TAATATCA CACATAGC CCCTTGTGGTT GTGGG TAGCTTTCGGT AGTTTTTC GTCAA TTTAACCGC  GTGTCAAAC TC AAG                   CTCAT TGC           
       ||||||||||| ||| ||||| ||| ||||||||| |||||||| ||||||||||||| ||  |||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||  ||||||||| || |||                   ||||| |||            
       ATCCCATTTAT GTG ATTGG GGA ACCAATGTT GAAAACGT TACTGGGGGAATA GA  ATTATAGT GTGTATTG GGGAGCATCAA TACCC ATCGAAGGCCA TCAAAAAG TAGTT AAATTGGCG  CACAGTTTG AG TTC                   GGGTA ACG           
ATGAAAA           A   T     -   C         C        C             C  AA        A        G           C     -           -        A     T         GT         C  T   ATTAAAAAAACGTCTATTG     A   AAAGTAAAAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End