SE3550105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6323
  • Mimulus guttatus
  • SE3550105
  • PIF/harbinger
  • To2
  • scaffold_5:14185408-14185647
  • TTA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CCATGATA          A   A        ------------------AT    ATGAAACCCAATTGTATTATTGGACCTTGGAAGATCCAATAAAAAACATGCCTAAAAA
  AGGCCTCGTTTGGTTG        AGATTAGCCA GAT AATTAAAT                    TCTA                                                          
  ||||||||||||||||        |||||||||| ||| ||||||||                    ||||                                                          A
  TCCGGAGCAAACCAAC        TCTAATCGGT CTA TTGATTTA                    AACC                                                          
AT                -----CCC          A   A        GCAACCTGAAACAAACTACA    ATAGGGGTTATTGAACGACCCAGCTGGGCGTTTATAATATAATAGTACGGAACAGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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