SE3530107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6325
  • Mimulus guttatus
  • SE3530107
  • hAT
  • Hat10
  • scaffold_13:16975878-16976502
  • ATTATAAT
  • ATTATAATCAATGTAGTTAAAATCGAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
           T                 ---------------------------------CTAA  CGTAAAATCGTAAGACTTTAAGATTTTAGACACTGAAAAGGATTAAGATCGCACTAAAATCGCAGGTGCCTTAAAATCGTGTGAAATCGCGTTCAAAATCGTTAAAATCGTTACAAACGCGATTTTAGTGCGATTTTGGCGATTTTGGTTTTTGTCAACAATTGGGCTGAAATTTTGGATTTTGGCCTCATAAATTCAGTTTTTTAACTAAAATCTTTTAGCTGATTACCAAATAATCCAGAATATATAAAGCTCAGCCCT
ATTATAATCAA GTAGTTAAAATCGAGAT                                     AT                                                                                                                                                                                                                                                                     
||||||||||| |||||||||||||||||                                     ||                                                                                                                                                                                                                                                                      
TAATATTAGTT CATCAGTTTTAGCTCTA                                     GC                                                                                                                                                                                                                                                                     
           C                 AAATTCACTTTAGCCTCTCCCCATCATTTTAGCCTTT  ATTTTAGCCTAGCATTTTAGCATTCTAAAATGTACATAACATTTTATTTATATAAATCATGAATGATGAATCTTTTGTGGGCATTGTGTTTATTTTATTCAGTATTATGTGTATTTTACAGGATTTTTATATTTTGTAAGGTTGTAATTAATTTGTATCAGATTGTATTCTATTGACTTTGACTGTGAGTGTTGGCGACCTACAAAAAAATCGTCTTCTCTTCATAAAAGAAGGACAGCACTATCTAACAATAAAATCCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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