Plant MITE

SE3520108

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6326
Mimulus guttatus
SE3520108
Mutator
M7
scaffold_5:3588307-3588861
TAAAATTTA
TAAAATTTAGGGCAAATTGCATTTCACTCCCTAAAAGAATGTTTTTTTTGCACTTTCCACCCTCAAAATACAAAAACGAGACTGTCCTCCTTCGAAATATACGACTCGGTGCACTTTGTCCCAAATGTGTATTTCCAATTTACTTCTT

Secondary structure and sequence

TSD TIR

5'

3'

    A                   CA      AA     T   TT           C A                 -                                              -               A   AC     GTCGG      GTAAACTGG      AATTTC     TTAAAGATTTAAATGTCATTTATCATTTTTTCTTCTATATTACAATGATTATGCAGATCAAAGAACAAATTTTGTCGAATTAAGGAAGAAAATTTCGTCT
TAAA TTTAGGGCAAATTGCATTT  CTCCCT  AAGAA GTT  TTTTGCACTTT C CCCTCAAAATACAAAAA CGAGACTGTCCTCCTTCGAAATATACGACTCGGTGCACTTTGTCCC AAATGTGTATTTCCA TTT  TTCTT     ATTTGA         AAGGGT      GTCTT                                                                                                    
|||| |||||||||||||||||||  ||||||  ||||| |||  ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||||     ||||||         ||||||      |||||                                                                                                     
ATTT AAATCCCGTTTAACGTGAA  GGGGGA  TTCTT CAA  AAAACGTGAAA G GGGAGTTTTATGTTTTT GCTCTGATAGGAGGAAGCTTTATATGTTGAGCCACGTGAAACGGGG TTTACACATAAGGGT AGA  AAGAG     TGAATT         TTCCCA      TACAG                                                                                                    
    A                   AC      -A     T   -C           A -                 T                                              G               C   GT     -----      -------AA      --CATA     TAAAATGAAAAAAGCGAACTTTTAGGAAGAAATTCTCAATGAATCACAAAAGTTTAATTGCTTTAATAGAAGGGTTTAACTACTTTAAGAGTAGGTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520108

TAAAATTTAGGGCAAATTGCATTTCACTCCCTAAAAGAATGTTTTTTTTGCACTTTCCACCCTCAAAATACAAAAACGAGACTGTCCTCCTTCGAAATATACGACTCGGTGCACTTTGTCCCAAATGTGTATTTCCAATTTACTTCTTGTCGGATTTGAGTAAACTGGAAGGGTAATTTCGTCTTTTAAAGATTTAAATGTCATTTATCATTTTTTCTTCTATATTACAATGATTATGCAGATCAAAGAACAAATTTTGTCGAATTAAGGAAGAAAATTTCGTCTAATTTGGATGAGAATTTCATCAATTTGGGAAGATAATTTCGTTAATTTGAAAACACTAAGTAACTCTTAAAGAAGGATTTTCAAGCGAAAAAAGTAAAATGACATATACACCCTTAATTAAGTGAGAATGAGACTGGGAATACACATTTGGGGGCAAAGTGCACCGAGTTGTATATTTCGAAGGAGGATAGTCTCGTTTTTTGTATTTTGAGGGGAAAAGTGCAAAACAACTTTCTTAAGGGGGCAAAGTGCAATTTGCCCTAAAATTTA

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