SE3520109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6327
  • Mimulus guttatus
  • SE3520109
  • Mutator
  • M21
  • scaffold_10:4883399-4883841
  • TTTTTTCAT
  • TGGGATGTGATAAATGTCGTTTCAATTTTAATAATGTTGTTTTGACTTCAAATGTGATTTTGACCATTTTTGAGTTTGAATTGGGCAAAATTCAGAACATGGAATTTGCAGTTCTTTGAATTAGTTTTCTAATCTAACTTGAATCGCCAAGATTGGATGTCGGTTGAGAAAGTTATGCATGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
  TTTTTTCA        GA              A     A                 CA              CA     G          G              C     AT   C    C     A                          C A              T   G                -----   TGAACACTGCCCACAACTTTGATG
          TGGGATGT  TAAATGTCGTTTCA TTTTA TAATGTTGTTTTGACTT  AATGTGATTTTGAC  TTTTT AGTTTGAATT GGCAAAATTCAGAA ATGGA  TTG AGTT TTTGA TTAGTTTTCTAATCTAACTTGAATCG C AGATTGGATGTCGG TGA AAAGTTATGCATGAAT     CAA                        
          ||||||||  |||||||||||||| ||||| |||||||||||||||||  ||||||||||||||  ||||| |||||||||| |||||||||||||| |||||  ||| |||| ||||| |||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||     |||                         
          ACTTTACA  ATTTACAGCAAAGT AAGAT ATTATGGCAAAACTGAA  TTGTACTAAAACTG  AAAAG TTAAACTTAA CCGTTTTAAGTTTT TACCT  AGC TCAG AAACT AATCGAAAGGTTAGATTGAACTTAGT G TCTAACCTACAGCC ACT TTTCAATGTGTACTTA     TGT                        
TACTTTTTTG        --              C     G                 TC              TG     A          A              C     AT   A    T     C                          C A              C   A                ATCAA   AAAATTTAAAATGTATTAAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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