SE3550112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6330
  • Mimulus guttatus
  • SE3550112
  • PIF/harbinger
  • To2
  • scaffold_14:4655773-4656014
  • TAA
  • AGGCCTCGTTTGGTTGCCAAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CCA    AAAATTA     -   AA           C    GAAACTCAATTATATTGTTGGACCTTGGAAGATCCAATAAAAAAACATGCCTAGAAGGCAAGATAA
  AGGCCTCGTTTGGTTG   AGAT       GCCAA GAT  GATTAAATAGT TAAT                                                                  
  ||||||||||||||||   ||||       ||||| |||  ||||||||||| ||||                                                                   
  TCCGGAGCAAACCAAC   TCTA       TGGTT CTA  TTGATTTATTA CCTG                                                                  
AA                CCC    ------A     A   -A           A    AAACAAACTACAAACCATAGGAGTTATTATACGGCCAAGCTGGGCGTTTATAATACAATAGTACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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