SE3530113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6331
  • Mimulus guttatus
  • SE3530113
  • hAT
  • Hat11
  • scaffold_6:5652483-5653104
  • GTTGTTAC
  • ACTAGGGGTGTAAATTTGAATGGAATTTCCGAA

Secondary structure and sequence

TSD    TIR
5'



3'
GTTGTT          T     T  A      --T  C   TTCCG         A      --      C   T      CACTTTTTT  ATTCCGATTTCCGATATTCCGATTTCCAATTTTTCCGATTATTTTTGGAACGGAATTGGAATTACATATAAAATTATTGGAAATTCCAATTTCCGATCTGATTGTATTTCCGATATATATATATATATATATATATATTGTATTTTTGAATTGTTTTTTTCTACTCATGTTTTGCAAGAACTATATTTGTTTTGATAAACCGATTATGTTATTTTTACAAGTTTTTACA
      ACTAGGGGTG AAATT GA TGGAAT   TC GAA     CCAATTCCG TCCGAA  AATATC AAA TTGGAA         TC                                                                                                                                                                                                                                     
      |||||||||| ||||| || ||||||   || |||     ||||||||| ||||||  |||||| ||| ||||||         ||                                                                                                                                                                                                                                     T
      TGATCCCCAC TTTAG CT GCCTTA   AG CTT     ACGGAAAAA GCCTTT  AAGGTT AAA AAAAGC         CT                                                                                                                                                                                                                                     
CATTGT          C     C  -      CCT  C   ----T         -      AA      -   -      ---------  TCAATTTTTATCTAAGGTTAAAGGCAAGGTTTTTTTAGCCTTAAAGTTTTAGGTAAGGTTAAAGCCTTATGGAGCCTTAGCCGCCTTAAAGCCTTAAAAGCTTTTAACGTAATTAAGAATTAAAAAACAAGGTTTTAGCCTTTATTACCATTAAAAATCAAAAAAAAAATTATAAAAGCATTAAAAGGCTGTTTTCCGTTCTTACGTTTCGTTTCCAGTTATTCTACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End