SE3520114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6332
  • Mimulus guttatus
  • SE3520114
  • Mutator
  • M22
  • scaffold_8:16822534-16822981
  • TAAATAAAA
  • AGGGTAAATTACGGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAAA                AACA    AAA       A       T      -  AT   -C    C A  A         AAAAC CA     --TAACTA         TTTTTAAATAGAAAATGTGTAAAGTCCATTATAATTTATACACTTCGGTTAAATACGTGAAAATAAAAGAAAAAGTTTGAAATACGTAAAGTTTACATGAGATCTCGAGCAAG
        AGGGTAAATTACGGAA    CCCT   CTTAGGC AAATAAC AAAAAC CC  CCA  CTAT C TA TTACTAAAA     C  CTGAC        TTGACTGAG                                                                                                                 
        ||||||||||||||||    ||||   ||||||| ||||||| |||||| ||  |||  |||| | || |||||||||     |  |||||        |||||||||                                                                                                                 G
        TCCCATTTAATGCTTT    GGGA   GAATCTG TTTATTG TTTTTG GG  GGT  GATA G AT AATGGTTTT     G  GACTG        TTAAATACA                                                                                                                 
AAAATAAA                --GG    CTC       A       C      T  --   TT    A C  C         ---AA AG     TAAACAAA         GAATGTGTTTGGGGGGATACCACACTGAAAAGTGTTTTTTTACAGCTAAATAAGATGGAGGACGTAGTTAAAGAGCTTCTATAGTAATTACTTCAACAAGTATTTTAAGCACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End