SE3520115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6333
  • Mimulus guttatus
  • SE3520115
  • Mutator
  • M19
  • scaffold_3:17633686-17634448
  • TCAAAATAA
  • AGGCTTAATCCCACTTTGCACCCCTGAAATATGGCATTTTAGCACTTTGCACCCTTGAAACAAATTAATAGCATTTTGCACCCTCGAAACACAATAAATCATTCACAATGCACCTTGAATTGAATATTTAATACTTAATGAGGGTAATTTATTTTTTTATTGTTTTTTTTCCAGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TCAAAATA         C     T                   A    A                   -CA     A                                  T  C              T  ATA     TA  T               -TT      T  --T       CCA   ---     --    -  A TTAAATTATTATTTCCTTCCACCCCAACATAATTTCGAGCATATGAAATCCGAAAAAACAAAAATGACAAAGAATTACTGAAAAAACTATATTTTCTTAAAAAAAACAAAAAAACAAAAACAAAATTCACTAAGTTATTCGATTGGTGGATTTGTATATTGTAGTTAGTGAAAATATTTAGTA
        AGGCTTAAT CCACT TGCACCCCTGAAATATGGC TTTT GCACTTTGCACCCTTGAAA   AATTA TAGCATTTTGCACCCTCGAAACACAATAAATCAT CA AATGCACCTTGAAT GA   TTTAA  CT AATGAGGGTAATTTA   TTTTTA TG   TTTTTTT   GGA   TGCAA  ATAA CA A                                                                                                                                                                                       
        ||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||   |||||  || |||||||||||||||   |||||| ||   |||||||   |||   |||||  |||| || |                                                                                                                                                                                        
        TCCGAATTA GGTGA ACGTGGGGACTTTATGTCG AAAA CGTGAAACGTGGGAACTTT   TTAAT ATCGTGAAACGTGGGAGCTTTGTGTTATTTAGTA GT TTACGTGGGACTTA CT   AAATT  GA TTACTTCCATTAAAT   AAAAAT AC   AAAAAAA   CCT   TTTAC  TTTA TT A                                                                                                                                                                                       
AATAAAAC         A     T                   A    A                   TTA     -                                  C  A              -  AAA     TC  -               TAT      C  CAT       ---   CAA     AG    G  - AAAAAAAATAAGTAGGTAGTAAAGATTTAATATTTCACGTTTTTATTTTTGTATCAATTGGTTGTATAATTTAATAATAAAAAAAGTGTTTCTTTATAAATGGTTTTTTTTTTCTTGTTTTTTATAGGAAGTCGATAAATACACAGTTTCATAAACATTTAATATAAAAGAAGGTTTATAAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End