SE3520118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6336
  • Mimulus guttatus
  • SE3520118
  • Mutator
  • M2
  • scaffold_11:3137936-3138402
  • TATAAATCA
  • AGGGTAAATTACGGCCACCCCTGAGGTAAGGTCGAATTACGAAAAATCCCTCATGTTTGGGTAATTACAACCACCACCCTCAACTATGAATCTTCTTACACATCCACCCTTGCGGTGTCAAATTTAGTGGAATCTTCTAGATTATGTGGAATATTCTCCAGTTTGTACCCGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAATCA                  CC         G                -                             A  CTC              T     A          C              TGG      C      A        A     C         C      ACCCCA    AGCTCCACATTTTGAAACAAGATGATCATAAGATGTCTCTATC
         AGGGTAAATTACGGCCAC  CTGAGGTAA GTCGAATTACGAAAAA TCCCTCATGTTTGGGTAATTACAACCACC CC   AACTATGAATCTTC TACAC TCCACCCTTG GGTGTCAAATTTAG   AATCTT TAGATT TGTGGAAT TTCTC AGTTTGTAC CGTTTT      TTCG                                           
         ||||||||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||   |||||||||||||| ||||| |||||||||| ||||||||||||||   |||||| |||||| |||||||| ||||| ||||||||| ||||||      ||||                                            
         TCCCATTTAATGTCGGTG  GACTCCATT CAGTTTAATGCTTTTT AGGGAGTATAAACCCATTAATGTTGGTGG GG   TTGATACTTAGAAG ATGTG AGGTGGGAAT CCACAGTTTAAGTT   TTAGAA ATTTAA GCACCTTA AAGAG TCAAACATG GCAAAA      ACGT                                           
AACTAAATA                  -T         A                T                             -  AAA              C     C          A              GTA      -      G        C     A         A      -----C    TTTTACGTCAAAGACTACGTGGTGTTAGACTATAAATGTTCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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