SE3520119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6337
  • Mimulus guttatus
  • SE3520119
  • Mutator
  • M2
  • scaffold_3:5825593-5826004
  • TACTTTTTT
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTTTT    -       --  -    C - CTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACAGCCACCCCCTCGTTTTAAATATTTTTACGTAAAATTTATGTAATTCGTTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTATGAAATGTTGGCGTACCGAAATTTTGGTTCGGTTTTA
         GGGC AAATTAC  GG CCAC C C                                                                                                                                                                                  
         |||| |||||||  || |||| | |                                                                                                                                                                                   
         AAAA AATTAAG  AG CATT C G                                                                                                                                                                                  
      ATC    T       TG  A    - A TTTATTTCGGATGAACTATTCTTAATTTTTTTCATCCCGTTTAATGCCGGTGAGGGACTCGATACCAGTTTAATGCTTTTGGAGGGAGGACAAACCCATTAATGTCGGTGGGGGTAGTTGATACATAAATAGAATGCTTTTCTGGGGAGTTCTCCATTTAAATCCCTACAATTAAGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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