SE3530120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6338
  • Mimulus guttatus
  • SE3530120
  • hAT
  • Hat12
  • scaffold_9:3222692-3223209
  • GTCGGACC
  • GTCGGACCTAGACATGGCCACGGGCCGGGTCGGGTCGGACCCGCCGGGTCCGGGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    G   C                      -C  G         --          G       CCTACTTTTTTGGGACCCGAAACCGACCCGCGTGGATGCGGGTCCGGGTCCAAAACCTTAATTCACTAAAATTTGAATTTTCGGGTCGGGTCTGGTTCGGGTCCGGGTCGGTTCCAGGTGGACCCGAGTTTTTAGCCCTTGTAATTGAAAAAAATATATATTTTTTGAATTCTCGGACCGGGTCCTGTTCGAGTCC
 GTC GAC TAGACATGGCCACGGGCCGGGT  GG TCGGACCCG  CCGGGTCCGG TCCGGGT                                                                                                                                                                                                    
 ||| ||| ||||||||||||||||||||||  || |||||||||  |||||||||| |||||||                                                                                                                                                                                                    G
 CAG CTG ATCTGTACCGGTGCCCGGCCCA  CT GGCCTGGGC  GGCTTGGGCT GGCCGCT                                                                                                                                                                                                    
C   G   -                      AA  G         CG          G       GGCGGGGCGGGGCGGGGCAACTGGTACCTGGGCCTGGGCTTTTACATACCCAGCCAAAGCCCAGGGCTATAAAACCTGGGCTCTGGGCCGCCCACCTGGACTCCTGGGCTGGGCTCATGGGCAGCCCAGGTGGGCTTATTTTTGATAAAAAAAAGAGTTTAAAACTTTTACGTTGCCGATATTTGGCCTGGGCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3