SE3520121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6339
  • Mimulus guttatus
  • SE3520121
  • Mutator
  • M2
  • scaffold_7:1871016-1871368
  • TTAAAGATA
  • AGGGCAAATTACGGCCACCCCCTGAGGTATGACCAAATTACGAAAAAACTCTTGTTTGGGTAATTACAGCCACCCCTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAGAT                  CC      G    AC             ---AA                       --        TTTTAAATATTT     TAAAATTTATGTAATTCGGTTATTTACCGAAACAAATCGTATATTTAGTTCGGTAAACGGTATGAAATGTT
        AGGGCAAATTACGGCCAC  CCTGAG TATG  CAAATTACGAAAA     CTCTTGTTTGGGTAATTACAGCC  ACCCCTCA            TTACA                                                                       
        ||||||||||||||||||  |||||| ||||  |||||||||||||     |||||||||||||||||||||||  ||||||||            |||||                                                                       G
        TCCCGTTTAATGCCGGTG  GGACTC ATAC  GTTTAATGCTTTT     GAGGACAAACCCATTAATGTCGG  TGGGGAGT            TAGAA                                                                       
ATAGAAAT                  -A      A    CA             GGGGA                       TG        --TGATACATAA     TGTTTTTCTGGGGACGTCTCCATTTAAATCCCTACAATTAAGCCATTTTGGCTTGGCTTTAAAGTCATGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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