SE3550122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6340
  • Mimulus guttatus
  • SE3550122
  • PIF/harbinger
  • To13
  • scaffold_8:938409-939063
  • TTA
  • AGAGCAACTCCAATGGAGAGACATTAAAATGGAGCATTAAACATTCATTTGATACTTGATAATTGATATAATACTTTGATACTTCTAGAAAAAAAATTCACTCCAACCACAAGTATCAAATAGATTATCAAATTTTAAATATGTGAATAATTATATTATTAAATGCCACGTGGCAAATTGTGATAGGTTAATAGAGTGGTTACATTTTTGATACCTCATTTTCCAGGGAGTATTTTTGCACCTCGGGGTGGTTGAATATCAAAATAGTTCTCCCTTTAGAGCAACTCCAATGGAGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                                       A                                                                                                                                      AA    T              G                                                                             C     A  AA     A       --------ACTAAA            CTAAAAA
  AGAGCAACTCCAATGGAGAGACATTAAAATGGAGCATTA ACATTCATTTGATACTTGATAATTGATATAATACTTTGATACTTCTAGAAAAAAAATTCACTCCAACCACAAGTATCAAATAGATTATCAAATTTTAAATATGTGAATAATTATATTATTAAATGCCACGTGGC  ATTG GATAGGTTAATAGA TGGTTACATTTTTGATACCTCATTTTCCAGGGAGTATTTTTGCACCTCGGGGTGGTTGAATATCAAAATAGTTCTCC TTTAG GC  CTCCA TGGAGGA              TGGGGTATCAAA       
  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||| |||||||              ||||||||||||       A
  TCTCGTTGAGGTTACCTCTCTGTAATTTTACCTCGTGAT TGTAAGTAAACTATGAACTATTAACTATATTATGAAACTATGAAGATCTTTTTTTTAAGTGAGGTTGGTGTTCATAGTTTATCTAATAGTTTAAAATTTATATACTTATTAATATAATAATTTACGGTGCACCG  TAAC CTATCCAATTATCT ACTAATGTAAAAACTATGGAGTAAAAGGTCCCTCATAAAAACGTGGAGCCCCACCAACTTATAGTTTTATCAAGAGG AAATT CG  GAGGT ACCTCCT              ACCTCGTAGTTT       
AT                                       G                                                                                                                                      GA    C              G                                                                             T     A  --     A       CCTAAAAAATTAAA            CACCATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End