SE3520124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6342
  • Mimulus guttatus
  • SE3520124
  • Mutator
  • M2
  • scaffold_8:3279403-3279874
  • TTACAAATA
  • AGGGTAAATTACAACCAACCCCCTGAGATATGGTCAAATTACGAAAACCTCCTCCTGTTTGGGTAAATTACA

Secondary structure and sequence

TSD    TIR
5'



3'
TTACAAAT                 AC   C    A    G    A         --CC     C           A     ACCAC            -AAATC         G     A        T          TGG    T  G     ATA      AATA  ACT       C      ATCCCATTCGAACTCCACA     AAGCAAGATGATCATAATATGTGTTTTTTGGCTTATA
        AGGGTAAATTACAACCA  CCC TGAG TATG TCAA TTACGAAAA    TCCTC TGTTTGGGTAA TTACA     CCCCTCAACTAT      TTCTTACAC TCCAC CTTGTGGT TCAAATTTAG   AATC TC AGATT   TGGAAT    TC   TTTGTGC CGTTTT                   TTTTG                                     
        |||||||||||||||||  ||| |||| |||| |||| |||||||||    ||||| ||||||||||| |||||     ||||||||||||      ||||||||| ||||| |||||||| ||||||||||   |||| || |||||   ||||||    ||   ||||||| ||||||                   |||||                                      
        TCCCATTTAATGTTGGT  GGG ACTC ATAC AGTT AATGCTTTT    GGGAG ACAAACCTATT AATGT     GGGGAGTTGATA      AAGAATGTG AGGTG GAATACCA AGTTTAAGTT   TTAG AG TCTAA   ACCTTA    AG   AAACATG GCAAAA                   CGCAT                                     
ATAAACAT                 --   A    C    G    A         TTTT     T           -     -AGAT            CTAAAA         G     G        C          GTA    T  A     AGC      CACG  ATC       A      -------------------     TTTTATGTGAAAGACTACGTGGTGTGTTAGACTATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End