Plant MITE

SE3550125

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6343
Mimulus guttatus
SE3550125
PIF/harbinger
To5
scaffold_8:2378238-2378611
AAT
TGGCTATGTTTGTTAACGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

AA            T   C     CAAATTCTTTTCACATTTTCCCCAAAA      -- TATCTTTCTACACTATTTTCAAAAACTTTCCCCAAAACAAATTCAAATATTTCTCTCTCTAACAAACATGATTTGACCTCTACAGTGAAAATTGTCTTCACTAATATACAAAATCAAATTACTTTATCTTTTAAATTCTT
  TGGCTATGTTTG TAA GTTTT                           TGAAAA  T                                                                                                                                            
  |||||||||||| ||| |||||                           ||||||  |                                                                                                                                             
  ACCGATACAAAC ATT CGAAA                           GAAGGT  A                                                                                                                                            
TA            C   -     -----------------------ACTC      AA AGTAAAATAAAACCTCTTTCTATAAAACCCTCTTCTTAAACTTTTAATTTATTTCAAACAAACACAAAACTCTCCTCTATTAAACATGACATCGTTCAGTTTAGTACAGACTTTCCACAACCCTTTTCCATAAAACCTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550125

AATGGCTATGTTTGTTAACGTTTTCAAATTCTTTTCACATTTTCCCCAAAATGAAAATTATCTTTCTACACTATTTTCAAAAACTTTCCCCAAAACAAATTCAAATATTTCTCTCTCTAACAAACATGATTTGACCTCTACAGTGAAAATTGTCTTCACTAATATACAAAATCAAATTACTTTATCTTTTAAATTCTTCTTCCAAAATACCTTTTCCCAACACCTTTCAGACATGATTTGACTTGCTACAGTACAAATTATCTCCTCTCAAAACACAAACAAACTTTATTTAATTTTCAAATTCTTCTCCCAAAATATCTTTCTCCAAAATAAAATGAAAATGGAAGCTCAAAAGCTTACCAAACATAGCCAAT

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