SE3550127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6345
  • Mimulus guttatus
  • SE3550127
  • PIF/harbinger
  • To10
  • scaffold_10:17768953-17769189
  • TTA
  • AGGGTGCATTTGGATGGAGGGATTTGGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     G                        ----A       C        AATAA    -        A  TGTTTGGATTGAGGGATTTGGAGATGGATTTCAAATCCCCACCCCTCCTT
  AGGGT CATTTGGATGGAGGGATTTGGGGG     GGGATTT AAATCCAT     CAAA TCCCTCGG CT                                                  
  ||||| ||||||||||||||||||||||||     ||||||| ||||||||     |||| |||||||| ||                                                   
  TCCCA GTAAACCTACCTCCCTAAACCCCT     AACTAAA CCCTTACC     TAAA TTTACTGA GG                                                  
AT     G                        CCCTA       C        -----    C        -  TTAAAACCTCAGTAAACTTTAGGTAGTGATAACGAGGTTTTAGTTGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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