Plant MITE

SE3520129

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6347
Mimulus guttatus
SE3520129
Mutator
M16
scaffold_7:16076553-16076763
TCAGATATC
GATATCCGATTTGTTCGACCCTACACCCGGTGAAAAATACCGGGTGGGTCTTCTGCTGCCACGTGTCTCTTTTTTGTATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TCA     CC  --   G             C             C                         C        G      ATAA    T      CT   GT
   GATAT  GA  TTT TTCGACCCTACAC CGGTGAAAAATAC GGGTGGGTCTTCTGCTGCCACGTGT TCTTTTTT TATTTT    TAGA TCCCTG  AGG  
   |||||  ||  ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||    |||| ||||||  |||  T
   CTATA  CT  AAG AAGCTGGGATGTG GCCACTTTTTGTG CCCACCCAGAAGACGACGGTGCACA AGAAAAAA ATAAAA    ATTT GGGGAT  TCC  
  C     AA  CC   G             A             A                         -        A      --AG    T      -C   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520129

TCAGATATCCGATTTGTTCGACCCTACACCCGGTGAAAAATACCGGGTGGGTCTTCTGCTGCCACGTGTCTCTTTTTTGTATTTTATAATAGATTCCCTGCTAGGGTTTACCTCTAGGGGTTTTAGAAAAATAAAAAAAAGAACACGTGGCAGCAGAAGACCCACCCAGTGTTTTTCACCGAGTGTAGGGTCGAAGGAACCTCAAATATCC

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