SE3520130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6348
  • Mimulus guttatus
  • SE3520130
  • Mutator
  • M16
  • scaffold_14:16506986-16507195
  • GTGGGATAC
  • GTGGGATACGATTTGTTCGACCCTACACCCGGTGAAAAACACCGGGTGGATCTTCTGCTGCCACGTGTCTCTTTTTTTGTATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
   GGA    A   G                        C         A                  C         G      ATAA    TT    GCT   GT
GTG   TACG TTT TTCGACCCTACACCCGGTGAAAAA ACCGGGTGG TCTTCTGCTGCCACGTGT TCTTTTTTT TATTTT    TAAA  CCCC   AGG  
|||   |||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||    ||||  ||||   |||  T
CAT   GTGC AAG AAGCTGGGATGTGGGCCACTTTTT TGGCCCACC AGAAGACGACGGTGCACA AGAAAAGAA ATAAAA    ATTT  GGGG   TCC  
   AGG    C   G                        A         C                  -         -      --AG    -T    ATT   AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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