SE3520131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6349
  • Mimulus guttatus
  • SE3520131
  • Mutator
  • M16
  • scaffold_10:13367834-13368044
  • AAGGATATA
  • CTTCTTCGACCCTACAGTCGGTGATAAACATCGGGTGGTATTCTGCTGCCACGTGTCATTTTTTGTATTTTATAATATATTCCTCCACTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGGATATAGA         C      G   G                 -TA                        --G      -A   TAT      CC  T   GT
           CTTCTTCGA CCTACA TCG TGATAAACATCGGGTGG   TTCTGCTGCCACGTGTCATTTTTT   TATTTT  TAA   ATTCCT  AC AGG  
           ||||||||| |||||| ||| |||||||||||||||||   ||||||||||||||||||||||||   ||||||  |||   ||||||  || |||  T
           GAGGAAGTT GGATGT GGC ACTATTTGTAGCCCACC   AAGACGACGGTGCACAGTAAAAAA   ATAAAA  ATT   TGAGGA  TG TCC  
ATATAGGAACC         A      G   A                 CAG                        AAA      AG   --T      -A  -   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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