SE3520132

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6350
  • Mimulus guttatus
  • SE3520132
  • Mutator
  • M24
  • scaffold_9:12522783-12523138
  • TTTTAATTT
  • GGGTAAATAGCACTTAAGCCCCTCGTGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTAATTT                 G     C       AAAC             GC    C       CAATATAGCACATGACCCCCTTGTATTTTAATATAATCAAATAACTCCCTTGTACTTTCAAAACTTTCCTTTTCCTAATGAGCAAGATTATTTATCAAGTGGAATACC
         GGGTAAATAGCACTTAA CCCCT GTGGTTT    TTTGTGCACATGA  CCCT TTATTTT                                                                                                            
         ||||||||||||||||| ||||| |||||||    |||||||||||||  |||| |||||||                                                                                                             
         CCCATTTATCGTGAATT GGGGA CACCAAA    AAACACGTGTACT  GGGA ACATGAA                                                                                                            
TTTAATTTT                 G     -       CTCC             GA    -       AATTATATTCGTGTACTGATGAAAGTTATATTCGTGTACTGAGGGACATCAAACTTAAAACACGTGTACTGGAGGAACATGAAAATTATATTCGTGTATTGGGGGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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