SE3550133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6351
  • Mimulus guttatus
  • SE3550133
  • PIF/harbinger
  • To1
  • scaffold_11:13697310-13697590
  • TTA
  • AGGTGGTGTTTGCAAAAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     -----------------------TTAC       TATGAGCTTCTTTTCTGTCATAATCTATTTTTAAGTGTTTGCAAAATCAATTTTTGTTTTGCTTCTCTTAAAATAAACAACTTTAATTAATAATT
  AGGTGGTGTTTGCAAAAGCTT                           AATAGAT                                                                                               
  |||||||||||||||||||||                           |||||||                                                                                                
  TCCACCACAAACGTTTTCGAA                           TGAATTT                                                                                               
AT                     TAAATTTTTATCTTCAATACCTAACAC       GACCAAAATTCACGAAAAAGATTTTCAACCCCCACAAACGTTTAAATGACTTTTTATTTGAATTTATCTTTTTTGTCCCAGTACCCACGAATTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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