Plant MITE

SE3520134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6352
Mimulus guttatus
SE3520134
Mutator
M9
scaffold_7:8663742-8664076
TTAATTAAG
TTAATTAAGTGGGAAAATTACAGTTTTTATCCCTCAAGTTTGTACCGATTGCACATTTAATCCCTCATGTTCAAAAAAATACATTTGGTCCCTCATGTTTGAATAATTTAACACTTTTGGTTATTTCCATCAATTT

Secondary structure and sequence

TSD TIR

5'

3'

           T        T                A         C    G        A             -  A                  A     G  T                  ATT   A       ATCTTTA      CAGTTAAGGCAGTGACGGGCA
  TTAATTAAG GGGAAAAT ACAGTTTTTATCCCTC AGTTTGTAC GATT CACATTTA TCCCTCATGTTCA AA AAATACATTTGGTCCCTC TGTTT AA AATTTAACACTTTTGGTT   TCC TCAATTT       GTCCGT                     
  ||||||||| |||||||| |||||||||||||||| ||||||||| |||| |||||||| ||||||||||||| || |||||||||||||||||| ||||| || ||||||||||||||||||   ||| |||||||       ||||||                     C
  AATTAATTC CCTTTTTA TGTCAAAAGTAGGGAG TCAAACGTG TTAA GTGTAAAT AGGGAGTACAAGT TT TTTGTGTAAACCAGGGAG ACAAA TT TTAAGTTGTGAAAATCAG   AGG AGTTAAA       AGGCAA                     
TG         -        -                C         A    A        C             C  C                  C     G  T                  AAC   C       -------      GTTTGGTTGCCTTAGTTCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520134

TTAATTAAGTGGGAAAATTACAGTTTTTATCCCTCAAGTTTGTACCGATTGCACATTTAATCCCTCATGTTCAAAAAAATACATTTGGTCCCTCATGTTTGAATAATTTAACACTTTTGGTTATTTCCATCAATTTATCTTTAGTCCGTCAGTTAAGGCAGTGACGGGCACACACTTGATTCCGTTGGTTTGAACGGAAAATTGACGGACAAGACTAAAAGTGTTGAATTTTTGAAACACGAGGGACCAAATGTGTTTCTTCTGAACATGAGGGACTAAATGTGAAATTAGTGCAAACTCGAGGGATGAAAACTGTATTTTTCCCTTAATTAAGT

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