SE3520136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6354
  • Mimulus guttatus
  • SE3520136
  • Mutator
  • M8
  • scaffold_14:12021945-12022417
  • TATAATAAA
  • AGGGTAAATTACAACCACCCCTGAGGTATGGTTAAATTACGAAAAAAACTCTCATGCTTGGATAATTACATCTATCCCTCAACTATGAATTTTCTTACATCTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATAA       A             -                        AAA     A  C    A                  A                   ------ -         A    G       CAACAT    A        CC             TAG    T           GCAAAAATACA  T CTGATGCACCACAATCTGATATATACAAGCCAAAAAACA
        AGGGTAA TTACAACCACCCC TGAGGTATGGTTAAATTACGAAAA   CTCTC TG TTGG TAATTACATCTATCCCTC ACTATGAATTTTCTTACAT      C TCCACCCTT TGGT TCAAATT      AATC TTTAGATT  GTGGAATATTCTT   TTTG ACTCGTTTTGT           GT T                                       
        ||||||| ||||||||||||| ||||||||||||||||||||||||   ||||| || |||| |||||||||||||||||| |||||||||||||||||||      | ||||||||| |||| |||||||      |||| ||||||||  |||||||||||||   |||| |||||||||||           || |                                       C
        TCCCATT AATGTTGGTGGGG ACTCCATACCAGTTTAATGCTTTT   GGGAG GC AACC ATTAATGTAGGTGGGGAG TGATATTTAGAAGAATGTG      G AGGTGGGAA GCCA AGTTTAA      TTAG AGATCTAA  TACCTTATAAGAG   AAAC TGGGCAAAATA           GG G                                       
AAATAATA       C             G                        GGG     G  A    C                  A                   CAGGAC C         C    A       AACACC    A        TA             TTA    C           -----------  - TAAACCCGAGGTGTAAAACTTCGATCTACTAGTATTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End