Plant MITE

SE3530138

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6356
Mimulus guttatus
SE3530138
hAT
Hat13
scaffold_6:5174992-5175596
GGTGTAGT
TAGTTAGGGGTGAGCA

Secondary structure and sequence

TSD TIR

5'

3'

GGTG  G         A   AAAAAAC  AAAAACCGAAAAACCGAACCAAAAACCGAAAAAACCGAGCCGATATGTACCGTCCCGACTTAAAACCGCATACACGGTAATTTTTTTTTGAAAAACCGAAAATATCGGTTTGTGTATGGAGAATTTAAAAATTACCGAACCGATTTCCCGAACCGAACCGATTTATACAAAATGATGTATTTTTGATATATATTATAAATATTTACCCTAGCGTGCCTCTATCTTTCGAGCGCCTCCATGTGACATCGTTTTCTATTAATTAATTTTGGTTGTGA
    TA TTAGGGGTG GCA       CG                                                                                                                                                                                                                                                                                   
    || ||||||||| |||       ||                                                                                                                                                                                                                                                                                    
    GT GATCCCCAC CGT       AG                                                                                                                                                                                                                                                                                   
TGAT  G         A   ---GCCC  CCATGCCGAGCCAAAAAGGTTATTTGGTTTGTGCATGGCTATTATAGCCAAAGAGCATAAAATTTTTGGCTTATACAGCCAAAAAAAGCCAAGCCACACTTAGCCAAAAAGCCAAAAGCCAATTGCCAAAGCCATAGTTAAGCCAAATAAAAGCCAAAGCTAAAGTAGATAAACAAGCTTGGCCAAGCCGTATTTTGGGTATATAAACCTGAAAGTAATATAAATAAACTCTTTTAATTGTTTATTGTTGGCTTTTAATTGATTATTTTTTGTGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530138

GGTGTAGTTAGGGGTGAGCAAAAAAACCGAAAAACCGAAAAACCGAACCAAAAACCGAAAAAACCGAGCCGATATGTACCGTCCCGACTTAAAACCGCATACACGGTAATTTTTTTTTGAAAAACCGAAAATATCGGTTTGTGTATGGAGAATTTAAAAATTACCGAACCGATTTCCCGAACCGAACCGATTTATACAAAATGATGTATTTTTGATATATATTATAAATATTTACCCTAGCGTGCCTCTATCTTTCGAGCGCCTCCATGTGACATCGTTTTCTATTAATTAATTTTGGTTGTGACGTGTTTTTTATTAGTTAATTTTCGGTTGTTATTTGTTAATTTTCTCAAATAAATATAATGAAAGTCCAAATATATGGGTTTTATGCCGAACCGGTTCGAACAAATAGATGAAATCGAAACCGAAAATAAACCGAATTGATACCGAAACCGTTAACCGAAAACCGAAAAACCGATTCACACCGAACCGAAAAAAACCGACATATTCGGTTTTTAAAATACGAGAAACCGATATTATCGGTACGTGTTTGGTTTATTGGAAAAACCGAGCCGTACCGACCCGTGCACACCCCTAGGTGTAGT

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