SE3520139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6357
  • Mimulus guttatus
  • SE3520139
  • Mutator
  • M25
  • scaffold_1455:4567-5028
  • TATCAGATA
  • TATCAGATA

Secondary structure and sequence

TSD    TIR
5'



3'
    A    CTGAAA  C     C C           -       T  A      -  -      -----------TATTT          AATATTAT     CCT   CCACTC     CTTTTCCCTTAACCTTTTCACAAAATTACACACTAAAAACGTTCATAGCATTCCAACTTCGAATTTGAGAACAACTTCACGTGTTCAAACTTAAATAAATTTGGAATTTGAGGAAAAAAATCGAA
TATC GATA      TG TAAAT C ACACTAAATTT ACTAAAT CT TACACA AC TTAAAA                TTCTCTCTAA        CTTCT   TCT      TTCTT                                                                                                                             
|||| ||||      || ||||| | ||||||||||| ||||||| || |||||| || ||||||                ||||||||||        |||||   |||      |||||                                                                                                                             T
ATAG CTAT      AC ATTTA G TGTGATTTAAA TGATTTA GA GTGTGT TG AATTTT                AAGAGAGATT        GAAGA   AGA      TCTAT                                                                                                                             
    A    CCCCGC  A     A A           A       -  -      A  T      TTTTTTAGATTAATAT          --------     --C   -----T     TAAAATAGGCTTAGTGAGTTTTAAATAATAAAAAATGCACTTATTATTATTTTTTTTTACTAAAATCAAAATAAATTATAAATAAGTTAAAGTAATTCAAAAAAATTAATAAGTTTAAGTATAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End