SE3550140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6358
  • Mimulus guttatus
  • SE3550140
  • PIF/harbinger
  • To10
  • scaffold_12:15771525-15771761
  • TTA
  • AGGGTGCATTTGGATGGAAGGATTTGGGGAAGGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       A                      A      TCA   ------   TAAT     A  - CTTGGACTTGTTTGGATTGAGGGATTTGGGGATGAATTTCAAATCCACACCCCTCCTT
  AGGGTGC TTTGGATGGAAGGATTTGGGGA GGGATT   AAT      CCA    AACAA TC C                                                          
  ||||||| |||||||||||||||||||||| ||||||   |||      |||    ||||| || |                                                          T
  TCTCACG AAACCTACCTTCCTAAACCCCT CCCTAA   ACT      CTT    CCCTA AA T                                                          
AT       C                      -      ---   AAACCC   ----     -  C TTACTGAGGTTAAAACCTCAGTAAACTTTAGGTGGAGTTAACGAGTTTTGTATTGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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