SE3550141

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6359
  • Mimulus guttatus
  • SE3550141
  • PIF/harbinger
  • To6
  • scaffold_6:7463277-7463689
  • TAA
  • AGGCCTCGTTTGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ---------     - T  - G ATTATATTGGATTAGGTGAGATTGGATTAATATTCCACTGACTAATTAATTATTTAGTCAGTAAGATGTTTGATTCGTTAGACTAAATCTTGTATTAAATTTGTTAAATTCTGGTATTTAATGTGAATTGTCTAAAAAGTATTTTAATTAAAAAAATTAAGATATTGTTTTAAG
  AGGCCTCGTTTGCT         TACCT A AT C G                                                                                                                                                                              
  ||||||||||||||         ||||| | || | |                                                                                                                                                                               
  TCCGGAGCAAACGA         ATTGG G AT A T                                                                                                                                                                              
AA              ATCACGATA     A -  A - TGATTTATCATCCCCAATCATTCTACAAACCAACTAATCTAAGCATAAATCAGTTCGGGCGATGATATGAGTTTCGGGCGTTAATTCACGATAATAAACCAATTAAATAATCGTGTAGAGGGGGACGCTAATTAAAACATCCCCCACTAATTTTCTCCTTTTATGTTTAAAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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