SE3520143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6361
  • Mimulus guttatus
  • SE3520143
  • Mutator
  • M2
  • scaffold_5:22204483-22204844
  • TTTTTTTTA
  • AGGGCAAATTACGGCCACCCCCCTGATCTATGGTGAAATTACGAAAACCCCCCTTCTGTTTGGGTAATTACAGCCACCCCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTT                        G TC      G            CC      C            TA              -AACTAT      ATC     -    GAC    C  GAGGTAAATTAAGGGATGTTAATTCGGTAAAACCGAACCAAAATTTCGGTACGCCA
        AGGGCAAATTACGGCCACCCCCCT A  TATGGT AAATTACGAAAA  CCCCTT TGTTTGGGTAAT  CAGCCACCCCCCTC       ATATTT   TTACG AAAA   CCCT AA                                                        
        |||||||||||||||||||||||| |  |||||| ||||||||||||  |||||| ||||||||||||  ||||||||||||||       ||||||   ||||| ||||   |||| ||                                                         
        TCCCGTTTAATGCCGGTGGGGGGA T  ATACCA TTTAATGTTTTT  GGGGAG ACAAATCCATTA  GTCGGTGGGGGGAG       TATAAA   AATGC TTTT   TACA TT                                                        
ATTTTTTT                        G CC      G            TT      A            AG              GAAAATT      ---     A    AAA    -  AAGCCAATAAATAGCTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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