SE3520146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6364
  • Mimulus guttatus
  • SE3520146
  • Mutator
  • M8
  • scaffold_7:3755626-3756092
  • TTATTTTTA
  • AGGGTAAATTACAACCACCCCCTGAGGTATGGTCAATTTACGAAAAAACCCCTCTTGTTTGGAGAATTACATCTACCCCTCAACTATGATTTTTTCTTACACGTCCACCCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTTTT                     C              T         AA      T       AG       T      C          TT               A     ATAATGTA     -CAACATAACA  T     TC         GC  TAG         ------ T   GTGTAAAAATACAGTTTCTGATGCACCACAATCTGATATATACAAGCC
        AGGGTAAATTACAACCACCCC TGAGGTATGGTCAA TTACGAAAA  CCCCTC TGTTTGG  AATTACA CTACCC TCAACTATGA  TTTTCTTACACGTCC CCCTT        AAATT           TC AGATT  GTGGAATGT  TC   TTTGTACTC      G TTT                                                
        ||||||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||  ||||||| |||||| ||||||||||  ||||||||||||||| |||||        |||||           || |||||  |||||||||  ||   |||||||||      | |||                                                A
        TCCCATTTAATGTTGGTGGGG ACTCCATACCAGTT AATGCTTTT  GGGGAG ACAAACC  TTAATGT GGTGGG AGTTGATATT  AGAAGAATGTGCAGG GGGAA        TTTAA           AG TCTAA  TACCTTATA  AG   AAACATGGG      T AGG                                                
ATTTTTAT                     -              T         GG      T       CA       T      T          -T               C     CGCCAAAG     ATCACCTTAAA  C     TA         AT  TGA         TTAAAA -   GTAAGCTTGAAGTGTAAAATTTCGTTCTACAAGTATTATACACAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End