SE3520147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6365
  • Mimulus guttatus
  • SE3520147
  • Mutator
  • M8
  • scaffold_10:13122906-13123261
  • TTGCATTTT
  • TGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
   T    TTTT            C           T               A   CC              G                G   -AACTAT     ATC     -    GAC    CC   GGTAAATTTAGGGATGTTAATTCGGTAAAACCGAACCGAAATTTCGGTACGCCA
    TGCA    GGGCAAATTACG CCACCCCTGAG TATGGTCAAATTACG AAA  CCCCTCCTGTTTGG TAATTACAGCCACCCC CTC       GTATT   TTACG AAAA   CCCT  AGA                                                      
    ||||    |||||||||||| ||||||||||| ||||||||||||||| |||  |||||||||||||| |||||||||||||||| |||       |||||   ||||| ||||   ||||  |||                                                      A
    ACGT    CCCGTTTAATGC GGTGGGGACTC ATACCGGTTTAATGC TTT  GGGGAGGACAAACC ATTAATGTTGGTGGGG GAG       TATAA   AATGT TTTT   TACA  TTA                                                      
TTTT    ---T            C           C               C   TT              A                -   GAAAATT     --A     A    AAA    --   AGCCAATAAATGGCTTGATTTAGTATATAAATCAAGCCATTTGCCATACTTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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