SE3520149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6367
  • Mimulus guttatus
  • SE3520149
  • Mutator
  • M2
  • scaffold_9:11676523-11676991
  • TAAATAAAA
  • AGGGCAAATTACAACCACTCCCCGGAGGTATGGTCAAATTACAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAAA    C                 CG                  A   AAAAAA    A       A        T   A   -C                C     C         A    G       CAACAC    A     A  CC             TAG                G AA   - -    T  C GATGCACCAAAATCTGATATTTACAAGCCAAA
        AGGG AAATTACAACCACTCCC  GAGGTATGGTCAAATTAC AAA      TCTC TGTTTGG TAATTACA CTA CCC  TCAACTATGAATCTTC TACAT TCCACCCTT TGGT TCAAATT      AATC TCTAG TT  ATGGAATGTTCTC   TTTGTACTCGTTTTGT C  AAA T ACAG TT T                                
        |||| |||||||||||||||||  |||||||||||||||||| |||      |||| ||||||| |||||||| ||| |||  |||||||||||||||| ||||| ||||||||| |||| |||||||      |||| ||||| ||  |||||||||||||   |||||||||||||||| |  ||| | |||| || |                                A
        TCCC TTTAATGTTGGTGAGGG  CTCCATACCAGTTTAATG TTT      GGAG ACAAACC ATTAATGT GGT GGG  AGTTGATATTTAGAAG ATGTG AGGTGGGAA GCCA AGTTTAA      TTGG AGATC AA  TACCTTATAAGAG   AAACATGGGCAAAATA G  GTA G TCGA GG T                                
AAAATAAA    A                 -A                  C   ---GGG    G       C        T   -   AA                A     C         C    A       ATCATC    A     C  TA             TTA                G --   A C    -  - GTAAAACTTCGGTCTACTAGTATTCTACGCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End