Plant MITE

SE3520154

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6372
Mimulus guttatus
SE3520154
Mutator
M2
scaffold_10:2664473-2664831
TTAAAAAAA
AAGGGCAAATTACAGTCACCCCTGAGCTATGGTGAAATTACGAAAACCCCCCTCTTGTTTGGGTAATTACAGCCACCCCTCAACT

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAA             A            C      G            CC                        C       CAA  ATATAT      ATC     AAA    ------    C  GAGGTAAATTTAGGGATATTAATTCGGTAAAACCGAACCAAAATTTCGGTACGC
       AAGGGCAAATTAC GTCACCCCTGAG TATGGT AAATTACGAAAA  CCCCTCTTGTTTGGGTAATTACAG CACCCCT   CT      GTATTT   TTACG   AGAC      CCCT AA                                                      
       ||||||||||||| |||||||||||| |||||| ||||||||||||  |||||||||||||||||||||||| |||||||   ||      ||||||   |||||   ||||      |||| ||                                                      C
       TTCCCGTTTAATG CGGTGGGGACTC ATACCA TTTAATGCTTTT  GGGGAGAACAAACTCATTAATGTC GTGGGGG   GA      TATAAA   AATGC   TTTG      ATTA AG                                                      
AAAAAAA             C            C      G            TT                        A       --A  AAAATT      ---     --A    AAATAC    -  CCAATAAATGGCTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520154

TTAAAAAAAGGGCAAATTACAGTCACCCCTGAGCTATGGTGAAATTACGAAAACCCCCCTCTTGTTTGGGTAATTACAGCCACCCCTCAACTATATATGTATTTATCTTACGAAAAGACCCCTCAAGAGGTAAATTTAGGGATATTAATTCGGTAAAACCGAACCAAAATTTCGGTACGCCAACATTTCATACCGTTTACCGAACTAAATATACGATTTGGTTCGGTAAATAACCGAATTACATAAAGTTTACGTAAAAATATTTAAAAAGAGGGGGTGACTGTAATTACTCAAACAAGAGGGGTTTTTTCGTAATTTGACCATACCTCAGGGGTGGCCGTAATTTGCCCTTAAAAAAA

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