SE3520155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6373
  • Mimulus guttatus
  • SE3520155
  • Mutator
  • M4
  • scaffold_3:14415136-14415682
  • TTTATTTAA
  • AAGGGTAAATTTCACTTTTCCTCCTTATACTTTCACTCGATATCACTTTAACCCCTTCTACTTTCGATTACATCAATATGCCTCCATGTACTTGAAAAATTGTCTCAATGTGGCCCTCGCCGTTAGTTTTCAGACATTTGACATTTACATCGTTTGATCTAGCTCTGAAAATTACAAAAAAACCACCCCTCCCAGTTTAAATAATTATTAAAAAAAATCAAAAAAATAAAAAATAAATTG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTT              -C        C         CAC   A          A  -        T       A    A  A   C   A                                  C       T            C   T               ---         A         AA    CC                             -----TC                  T  TGGATGGCT   TG  CT   TTT
       AAGGGTAAATTTCA  TTTTCCTC TTATACTTT   TCG TATCACTTTA CC CCTTCTAC TTCGATT CATC AT TGC TCC TGTACTTGAAAAATTGTCTCAATGTGGCCCTCGC GTTAGTT TCAGACATTTGA ATT ACATCGTTTGATCTA   GCTCTGAAA TTACAAAAA  CCAC  CTCCCAGTTTAAATAATTATTAAAAAAAA       AAAAAAATAAAAAATAAA TG         TCG  GA  ATG   
       ||||||||||||||  |||||||| |||||||||   ||| |||||||||| || |||||||| ||||||| |||| || ||| ||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||   ||||||||| |||||||||  ||||  |||||||||||||||||||||||||||||       |||||||||||||||||| ||         |||  ||  |||    
       TTCCCATTTAAGGT  AAGAGGAG AATATGAAA   AGC ATAGTGAAAT GG GGAAGATG GAGCTAA GTAG TA ACG AGG ACATGAACTTTTTAACAGAGTTACACTGGGAGCG CAATCAA AGTCTGTAAACT TAA TGTGGCAAACTAGAT   CGAGATTTT AATGTTTTT  GGTG  GAGGGTTAAGTTTATTAATAATTTTTTTT       TTTTTTTGTTTTTTATTT AT         AGT  CT  TGC   
AATTTAT              TA        -         CCA   C          -  A        T       C    C  A   -   A                                  A       C            A   T               ATA         -         GC    AA                             TTTCTTA                  T  TGTTTTTTT   -G  CT   TCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End