Plant MITE

SE3520156

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6374
Mimulus guttatus
SE3520156
Mutator
M16
scaffold_14:602616-602823
ATGATAATT
TGGTTCCTTCGACCCTACACCCGGTGATAAACATCGGGTGGGTCTTCTGCTGCCACGTGTTTCTTTTTTATTTTTCTAAAACCCCTAAAGG

Secondary structure and sequence

TSD TIR

5'

3'

ATGATAAT     CC                                                             --      --TC    A     -AA   TA
        TGGTT  TTCGACCCTACACCCGGTGATAAACATCGGGTGGGTCTTCTGCTGCCACGTGTTTCTTTTT  TATTTT    TAAA CCCCT   AGG  
        |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    |||| |||||   |||  A
        ACTAA  AAGCTGGGATGTGGGCCACTATTTGTGGCCCACCCAGAAGACGACGGTGCACAGAGAAAAA  ATAAAA    ATTT GGGGG   TCC  
TTAATAGT     AC                                                             AC      TATT    A     CGA   CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520156

ATGATAATTGGTTCCTTCGACCCTACACCCGGTGATAAACATCGGGTGGGTCTTCTGCTGCCACGTGTTTCTTTTTTATTTTTCTAAAACCCCTAAAGGTAAACCCTAGCGGGGGATTTATTATAAAATACAAAAAAGAGACACGTGGCAGCAGAAGACCCACCCGGTGTTTATCACCGGGTGTAGGGTCGAACAAATCATGATAATT

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