SE3550157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6375
  • Mimulus guttatus
  • SE3550157
  • PIF/harbinger
  • To1
  • scaffold_4:1161143-1161425
  • TAA
  • AGGTGGTGTTTGCAAATGCTTTTTGAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -CTT         ------------------     TGCGGTTTTTTTGCTCATAATCTGTTTTTAGGTGTTTGCAACATCAACTTTTGCTTTTGCTTCTCTTAAAATAATCTGCTTTAAGCTATTTTTTT
  AGGTGGTGTTTGCAAATG    TTTGAAAGT                  GATTA                                                                                               
  ||||||||||||||||||    |||||||||                  |||||                                                                                                
  TCCACCACAAACGTTTAC    AAATTTTCG                  AATTT                                                                                               
AA                  TAAT         TCTTCAATCACTAACACT     CAATCAAAATTCACGAATAAAGATTTTCAACCCCCACAAACGTTTATAAAGCCTTTTACTTGATTTTAACTTTTTCGTCCCAATCCCCACGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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